Scaffold Ga0315293_11070700

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315293_11070700

Scaffold Ga0315293_11070700

Overview

Basic Information
Taxon OID	3300031746 Open in IMG/M
Scaffold ID	Ga0315293_11070700 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	569
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5395	Long. (^o)	-110.3891	Alt. (m)		Depth (m)	61
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F013404	Metagenome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_110707002	F013404	AGGAGG	MTTIIDAVKKLDETIARQKSIANKLVEEHKQLQEALAIVCSNADEDCPLEYRTEHFRSAITDGYDLLKKVGYFRKRVKXLKKHTQ
Ga0315293_110707003	F003803	N/A	EYTDYAIIDNKELLTLNYKEIISKFFYDNKVDDEQFLSDGRAVRIESEIPITDADAKKLESLSMAYLHDFKLEEVA

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