NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10144825

Scaffold Ga0315293_10144825


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10144825 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1986
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048257Metagenome148N
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0315293_101448253F048257N/AMTAFPSSVAARQCLRGEGCSESVYWVLRRTLLINTGLRFAGERKNTLKKSFYGALAVQAFVMAWTATHMDEPVASLPSGETAIGGNSFEILGTYLTRSVIVGTGLWLGGERKNLLRNTLAGTAMIQATVLLWAQGKEL
Ga0315293_101448254F063343N/AKSTLIKLMIPGADRRLFSGFTQSTFSWVRNPASWVRVFNWTGVAAGINGLGGVGGGTLISRRHVLFANHVPYPNTPTGPVIPFEIFFVNANSRTFTYKVTNVQQVGDTDIAIGTLAQDADPSLNVYRVLPDNWAQYIANKVIPPSATFIAVGLTATTQAFVLPVLYTGQDRKVSTADVTNIMGGLAGVSIPAFEVARAFGDGVRGGDSGNPIFAMLGDELVLLGGWYRAANGDDTVGIFPWLLDQKLAIEKIMGMRLQVADMSGLDRIA

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