Scaffold Ga0315293_10056133

Overview

Basic Information

• Taxon OID: 3300031746
• Scaffold ID: Ga0315293_10056133
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3406
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F102646	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_100561331	F102646	N/A	MAIAIIGSAINTKVLKRQNFNKEPNGLETLIEAYAIKTSNRASVIPEKNTLHTAFSSASTTYQRMVVESVATEEEDGGITSMLVTFVGLTASTGLPPAIVRLIPTA
Ga0315293_100561333	F025225	GGA	MAKVINNQLGNVAVTAIGTTYRTNTSQIASEIQRVEGKIITKKVFKPFGLTKSGKIKKRKIGEYVVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKLGTGGLGMGTEPGTIGALARRLVAGRKSSVNYIRNGWAAAADVFGKRPNLTRGDYSKKAIMRLGGGTKADGTKAQMEGMIFNRAGDLDTRFYPVRKRAMSGAVKVGMPGLKMAIEKVIKKMNVELGDINKKTSDKLGL
Ga0315293_100561334	F019102	AGG	MNISLDEELNSAFIAPNKEYMGEPLANYTEGSRLLLMQVRDDADSSVYFIWSFIFIHIQLFKNRKEATKLAWDRDLFREKLLEYIDGKTEEDRAVAMKIVSSMIDDASKGRVDIIATPGQGEPGND