Scaffold Ga0307391_10788540

Overview

Basic Information

• Taxon OID: 3300031729
• Scaffold ID: Ga0307391_10788540
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-4.R2 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 544
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -55.8778
  • Long. (^o): 1.056
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011763	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307391_107885401	F011763	N/A	VTNVANSARLQEECDILVLRIAKVAKGNVNFAEFKSCMLASLRSLLPKDWSTQHEVSWSWLWENVERIMQTNMGNPTKWEKALGKFLASQDENQAFEIRKSIYNRFFALAPAGQDFFKQSNTYLHFIAERIMQMTLEIYKDPVKMVDDVSALGLRHVGYAIPTEFFGPFVTACVEIIGTV