NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307391_10029741

Scaffold Ga0307391_10029741


Overview

Basic Information
Taxon OID3300031729 Open in IMG/M
Scaffold IDGa0307391_10029741 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-4.R2 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2092
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)-55.8778Long. (o)1.056Alt. (m)Depth (m)24
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000820Metagenome / Metatranscriptome878Y
F018867Metagenome / Metatranscriptome232N
F029564Metagenome / Metatranscriptome188N

Sequences

Protein IDFamilyRBSSequence
Ga0307391_100297412F000820N/AMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDSDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDSDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALA
Ga0307391_100297413F029564AGGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDSDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDSDGMFAFGGENVTRGNLKNLVTDKPSPITVALA
Ga0307391_100297414F018867AGGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQKSDKDGMFAFGGENVTRGNLKNLITDKPSPITVALAQKSDSDGMFAFGGENVTRGNLKNLVTDKPSPITVALAQMEKSDKDG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.