Scaffold Ga0316576_10304349

Overview

Basic Information

• Taxon OID: 3300031727
• Scaffold ID: Ga0316576_10304349
• Source Dataset Name: Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1191
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location

• Location Name: USA: Alabama
• Coordinates
  • Lat. (^o): 30.2619
  • Long. (^o): -88.2383
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057384	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316576_103043492	F057384	GGAGG	MNPLRMDETTINASLDACLHGAQQGDTGQARQLHEMLGLMLLEEEAEGGRLWLTDHGRELLAEMHRQLGQCTGSGDQLHEAALTAVRLKPAPGRWRDTCEYLHSLRVAIAVANELCEQKSAGATPDLALAAQAVADRGEFDLDPGRIREVYGQIAETVGGFREISHC