Scaffold Ga0302321_100059774

Overview

Basic Information

• Taxon OID: 3300031726
• Scaffold ID: Ga0302321_100059774
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3703
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027031	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302321_1000597746	F027031	AGGCGG	MLAGYPARMTTTWRTLALLYPVMDAKYGSGLGRGHARRVMGRDERAAIERILETLPAIVESWSDGLATMAPLDVIEVRRSIRSLSSSGGGRWWVAPRECRDELESFVAPDRYDSIYALWPGDPSIPQCGWGCTLGPGEATFGAGFSSISTDHWATLATDPDPAQGYVHEWLHQVESVYRTFGVDEATLPGLHDAGDYTSTRSTAEPPFGRSYADYHDGRGTGQAPARTWSPWYRDWMTGRLQPVGGAAAVGVGTGGVAAGRATEERLAIGLTPKRWALRGR