Scaffold Ga0307469_10043660

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10043660
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2750
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium 13_1_40CM_2_61_4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F001423	Metagenome / Metatranscriptome	698	Y
F011193	Metagenome / Metatranscriptome	294	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_100436601	F001423	N/A	MKNVYEVLRQKELELSRLEKEVEALRVAAPLLSEDKEATTDSKPT
Ga0307469_100436602	F000151	GGAGG	MEMARNGSNGTGSRNLPGSSDPHVQEVVRAAHEELRQLMRQRADVMKRIGTVKQTIVGLANLFGDAVLSEELLELVDRKSGGRQPGFTKACRMVLMESDCPLGAREVCEKIQQRIPPVLLRHKDPLASVTTVLNRLVEYGEARTVVRDNGRRAWEWVADPADSGFAASRSGFPASSL
Ga0307469_100436604	F011193	N/A	DGKAVVREVKILSQRSGGVVVQGLNGGEDVITAAPQDLKDGEKIKIKGQS