Scaffold Ga0307474_10007349

Overview

Basic Information

• Taxon OID: 3300031718
• Scaffold ID: Ga0307474_10007349
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7938
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007635	Metagenome / Metatranscriptome	347	Y
F011455	Metagenome / Metatranscriptome	291	Y
F048074	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_1000734910	F048074	GGAGG	MARDKVDFRIVDYGTIFLLYPNTRRARRWVEENLPEDHVRFADASLVGLRFIDEITDGMRAADLDIEFDRVPIAS
Ga0307474_100073492	F011455	AGGAG	MRLKSLLFVLAFALAPVMRAQERPAQTPPPGGSGAQAEHRQKMMDMHRQETEAMRADIGRMKSSLAQMKAVVLAIRDPNELSLWRTNVDMWETVVAHLDRMQRSMESMGPGMMHGPGMGGPPPAPPAEKKPQ
Ga0307474_100073498	F007635	AGGGGG	MSKHKVAFDAHKVVKKESEVSFTKRDGTPVDFMAKKPVKVPVHVKFRAEDKE