Scaffold Ga0307474_10000030

Overview

Basic Information

• Taxon OID: 3300031718
• Scaffold ID: Ga0307474_10000030
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113451
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (57.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000414	Metagenome / Metatranscriptome	1169	Y
F042436	Metagenome / Metatranscriptome	158	N
F097708	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_1000003010	F042436	N/A	MINENEKGREHDLRQRIVSLIRANEQALKKPIANEEVQQLKAAAARLDQMLKAAVDADGQVLRSAAARLDQLLEDIATGKDVTYDLKRRRNWQKREDG
Ga0307474_1000003066	F097708	N/A	VDVLEPDQKVKKYLVDHPRSVPIVLTRDTNLAAMYNAQVYPIYVVIDRDGNIAGEQRGAGERGLREILRRAVLESQE
Ga0307474_1000003086	F000414	AGGAG	MSAPSRRPEIRRRRTRKEKIVQLRKRLAAAKTDADRTRITAKLQKLAVGSPGQPLVK