Scaffold Ga0307474

Basic Information
Taxon OID	3300031718 Open in IMG/M
Scaffold ID	Ga0307474_10000020 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	142688
Total Scaffold Genes	149 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (74.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

142688

Total Scaffold Genes

149 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

111 (74.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008518	Metagenome / Metatranscriptome	332	Y
F013105	Metagenome / Metatranscriptome	274	Y
F013941	Metagenome / Metatranscriptome	267	Y
F022550	Metagenome / Metatranscriptome	214	Y
F022969	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_1000002010	F022550	AGGAG	MTRRKLGTAILAILAGVGIFMTPSQAQTPNTKQPATKALTTAQQNVPAEYQAGIAQLRIGKGYLEKAGDKWGGYRVKGIASIDQAFKALGVSPESTPQEMESGNVDEPSMMNTGISSLETARTDLAKAGNNWGGRKETAVALIDQALKDLQTGINWAKEHKTY
Ga0307474_10000020141	F022969	N/A	MKNIYEVLRNKELELARLRTEVDALRFVAPLLADRIAEPGDVGPVHPPDIVWTPPLERNKWPLKMGHPASTYSDS
Ga0307474_1000002047	F013105	N/A	MKCREYVASCLLAIALLSSAPLAQQSSKQPTAPSKPSTSARAATLDLGAISGDTYRNPTFGFAYKLPFGWVDRTKEMAEDDSTDPPKSSLLLATFERPPEATGDSVNSAVVIAAEPTSSYPGLRTAEQYFDPLTAVTKSKGLAVVNEPYEFQVGTMQLVRGDFSKPLGNLTMHQSTLAVIEKGYVISFTFIGGTEDEVDDLLEGLKFGSKEAPTAHK
Ga0307474_1000002060	F013941	AGGA	MMRGLPKLLATVLFLGAMGSAQVAPYAGGGIGINGLSFQSPYYNADAGIDWGDLQPIFLEAEAGADTANPKPLNNGYTIRVHGVVMVRATPHWRFGGGVHFSDLFSSKYNSNSTWPTLGAMFERDWFRLNAQYLIPTTTDYTLNGPLFDIRMHLKQRFYFRERVGIYAYRNPNEASPAHHVSAVVDFGVLYVFRGCGKNCQ
Ga0307474_1000002090	F008518	AGG	MWMEKLSQGVLRVLTPLGPRYLNPSFAQRLYLLWIFRNFETLPVKVLSLRQQRRIEAMCARHGFVSVLEPNGLMDIPLLGTLEQRPPVAPTPRPDRSVSDAVSPFAADLQPRS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307474_10000020

Overview

Ecosystem & Geography

Associated Families

Sequences