NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10000006

Scaffold Ga0307474_10000006


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000006 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)217115
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)165 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012247Metagenome / Metatranscriptome282Y
F014165Metagenome / Metatranscriptome265Y
F014534Metagenome / Metatranscriptome262Y
F024394Metagenome / Metatranscriptome206Y
F047881Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_10000006152F014165AGGAMAIAKLKHPEENQFEELADRIATEINERANRMSPKERAQADSETKKIADRPQHRTP
Ga0307474_10000006160F012247AGGAGMLEKGDGIMSTYTGAVESFRKSATAFMQHVDLLSQARDAYQQAMTASQELRSALDAGDENLRTLMAQLEQALNLHLARPALDRKKPEPVKVEGLKASTESSGGVRAFP
Ga0307474_1000000627F047881N/AMTGQAGQNGVLRVSPTDRRGRPISPLVLCAAEEVSRRAIQHAERLLVDPAIAANLLEEAAVTVSRVVKAKNADEDSVRDLESYLFRAFLRRLNRTKKRQSLLEKAADLQAFLSRVSRDPRKALEMKILIDEFLMHCDPAIRDMLCRRIEGYSWKEIGWAYRISSHAAESKFSQALQKVRSKLGLK
Ga0307474_1000000689F014534GGAGGMDANYLVLCGMVWAQSGQETAGRELIRALGSSDDIVRVLARALLEQGGGCSKELIGQALADDEISESMASLCAFEQGQWSKFKSWDGNAWRTAALA
Ga0307474_1000000698F024394AGGGGGMKDIHEVLRRKQARYAQLAKQIEMLQQAAEKLREVAPLLAELEDDDAVVLSEVDEQPSTAKAASAAAGGSTGAPKAARGVAPRWP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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