NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310813_10098821

Scaffold Ga0310813_10098821


Overview

Basic Information
Taxon OID3300031716 Open in IMG/M
Scaffold IDGa0310813_10098821 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2265
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006121Metagenome / Metatranscriptome381Y
F036847Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0310813_100988212F006121GGAGGMVTTADPFSSWLAQAQVRAAALTAEQRATLQAAFHVRQHCGADYYSNRLLSHFLLHCGSGLQVAQIARLVGISRPTASRQQGLSSKEAVQAAHHRMAGRRTGKLLPRYAGPVAQFLLTHPQASRYDVLDFLEATWDVRVSTVALHHFLKRYGLDRATRQAAAAPARIEVVETVLAGHPVPRPAPPFSWPTRSTPAPSC
Ga0310813_100988213F036847N/AMPPALDWLATARACFADDYGALQQGLLTSVFALVTGLERIWHLDEMEDVGFALLCGGRRCPSRHRVGGWRRHLPWYAVDAFCRRTCPWDLLRGEDVLLGFDEHTLPRWTRKFRIGKGYVTTRNKYMRCEKLFYGYDLTRRRYLLVRATPGDWGLQDLAVPLLERVLRQARPRSVHALFDAGAGKSDAGVRALWDLVERHDPDLDVTLRACRYPHRLRAWKQLPEGLFVSLEEPGVCKGAPPKEVRVAETRTTLKGEDPEQAVRTVVCREVVPGPKPDRWHPLYTTCLADLEDVVPIFRTRQGQEQAFRVGVYDEFLDAVPCGYDKESPDRLRPRFQRGPLQMIGWLVALVYNAVADFTEDLDGDFAGCHIRTLRRLFFNRPGQLYGTPEALIVYLDPFAGQEALVPVLDRYNAAGHRLPWLENRRIVLSLTPRRGARAGP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.