Scaffold Ga0310813_10000542

Overview

Basic Information

• Taxon OID: 3300031716
• Scaffold ID: Ga0310813_10000542
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23585
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013117	Metagenome / Metatranscriptome	274	Y
F020403	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310813_1000054219	F013117	GAG	MRGYHRGRPICLYSVGVRKFMWRIGSVSTCLFILAGIGAAQSAQLILQQDLSSKLPTGTRFTATDSAGKVYNGHVVTRPARRLLRRGSMILVFDDPVAPVTKDPEGIFRAGNRNRLVKLGGSLAAAKIADDAVDTSIGASRARYVGMAVSAALIIFQKGGEAKLHRGDTVDVEPRREKPAEAELTPKNDLASKRNPPLETIQ
Ga0310813_1000054222	F020403	AGGAG	MNYPRVLLAAVAAVIVFFAWGFLTEGWLIRKDFAPSAALYRSSDMQMKYMPFGLASVLVGVLAAVVVYASWCHGASGAMKGLQFGLLMGVFVACIHPMSNLVTMNMNLKLGLEVSISTFIGWILAGLVIGLVYKPAAGAMH