Scaffold Ga0307476_10000089

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000089
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97557
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (71.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005311	Metagenome / Metatranscriptome	405	Y
F005887	Metagenome / Metatranscriptome	387	Y
F008092	Metagenome / Metatranscriptome	339	Y
F018412	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000008952	F008092	GAGG	MSTIPSTTIISNLKNATAATANTLKSSAVGGIDVSGMLALALSKATELKVCLALIVKSTDGADPNLVTLNDILASLT
Ga0307476_1000008953	F005887	GGAG	MMVSDRELALRAIDVEFQRAVLDKLVRLETKMDTLVGNGQPGRIKITEDKVAMLERSDLRNSLHNRMVNGAISAAISAAIALHKYWIK
Ga0307476_1000008957	F005311	AGGAGG	MGSGICADALVRAANAMLTALGGDQVSLLLPATAMASDAAGQLGLVDPGVQQVIVTPVVPRNLPTGNLGPIRRIEFTLPASAIEVQLPTLGIGTAEELFDAVLGLVYDGDLFHIEAFVTENFAGTAYFYVVTAVE
Ga0307476_1000008970	F018412	GGAG	MNSAINPEAAQPSATQSFEQSDRNPVVSNLIDADNGGQIPTPLSADSRVTQPGPVVSPNAGLQDYDMDDSADNVQDEAEREG