Scaffold Ga0307476_10000085

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000085
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100245
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (74.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000812	Metagenome / Metatranscriptome	881	Y
F004964	Metagenome / Metatranscriptome	417	Y
F030195	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000008519	F000812	GGTGG	MGFRPIFETVRSALYKLGRDFLSDATSNSAPAPKPRRSTIFAAGFLLLALALVVIYTSRNAFLSPLALVVVAAIGLAALLLQLRLRKDIGAPVRAPLGLNVLGLIFAVAAIFADVLRLSAGLLQVAALGAVVCFAISGIVVLQALRKPRA
Ga0307476_1000008550	F004964	AGGAGG	MCPGCMASAGLVAGSVVSTGGLTALVVKVFSKKKGEKNDAKTKEQGS
Ga0307476_1000008564	F030195	AGGA	MTGSGRIGWRFKDGTPWWFKIVVGLLVVDSALHFGLLLTVSTWAQSSPDALHSYRVPFRDGSIYFVQSWLGQYLDTRWIGIGLLLILVVLLFLNRDRLERAV