NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000018

Scaffold Ga0307476_10000018


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000018 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)195837
Total Scaffold Genes189 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)121 (64.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000978Metagenome / Metatranscriptome815Y
F003708Metagenome / Metatranscriptome473Y
F007325Metagenome / Metatranscriptome353Y
F014422Metagenome / Metatranscriptome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_10000018107F007325AGGAMLGARYQSWRWAAFALWTLAVGASGHAATGKEPTVEELKARLASMSIGARPRVCVEIAQKQLDEADKLYAANDLEKGQGVLTDVVTYAELARDYAVESHKYQKQTEIAARAMTRKLTDLLHSLGHDDQAPVQDAIKHLEKVRDDLLKAMFPKGQK
Ga0307476_10000018152F000978N/AMFAQTVGVKPRQKSGAQRICFCPQCAVSLAMGMPPEGALNLAAWDMIRDLVSAEPSLNEAAWESLRGMALLGTGEEAEAKVRFRRAG
Ga0307476_10000018187F014422N/AMKLLPASVNPVDPPPAPDLSTSLAPLTQKAIATRSQISLVPSPDAFARSSSTSTRRGEPNLIYGTPVEDSQSHDAGPSRGEYVSGWASSRPVEKTAVAHYLSYAAGLTAWSGRLINLYA
Ga0307476_1000001869F003708AGGAMKLVTLILPSFFLLTMFAHPIQRGIRAAQPAAANAVQDSDARPLSSEVTIEPGLSIGPLKLGDTRERALELFPKKNEDIEWQNSCGTTLDWVDAENRTGHGDLLIRLKKGKIFQIESTTTRFHTPEGITTFDHADKVVSAYRDMRAYTLLTPPVPALGDRPLVFWVDKRKGIAFVFAYYPAEHKRYIYKIIIFEPNKNFCPEEETTGSPKWQPISPYALEPPPELAPNL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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