Scaffold Ga0307476_10000004

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000004
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 768794
• Total Scaffold Genes: 784
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 478 (60.97%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003563	Metagenome / Metatranscriptome	479	Y
F005328	Metagenome / Metatranscriptome	404	Y
F046215	Metagenome / Metatranscriptome	151	Y
F058315	Metagenome / Metatranscriptome	135	Y
F062023	Metagenome / Metatranscriptome	131	Y
F084482	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_10000004168	F046215	N/A	MSAARKRDILSPAEVLGARPNWTKEPKAWEHAVGDSEVVYEDRHVVVFHDPEDEEHETERIAGEIRLTLLSKKDGVDSLMDLGVADETLNAAILHGIQQAALRLGLEKQGFEVRAHVYPPLQHRPELAFKIRAGKPPKKAADPQAS
Ga0307476_1000000442	F003563	AGG	MAPSTAALNARYIGRTLFVNGTPVTAARVNLNPLPRYATLFPDLQAKSKFEYVINFYGTYASIFDYPKSTKQIGTINNVGGQGCTNVLWGYGKRTFWIVAGAQQISLYLVPQKLLRTLSVPTGMPSSCAMNFAGDLAVGILNYTNAGDVVIFKHAGGAGTYYPTQLTREYFDGYDNKGNLFADGFRSSGFGLVELPKGSSKFQLITTSNRVGFPGSVQWDGKYLTVLDQYGNSIYQYTVSGTRATLKGTVSLKGAGDCAQTWIVKGLVYCGDATDNNGSVYRYPAGGSPIAVFTGNFDTPLGVVAAEK
Ga0307476_1000000444	F003563	AGGTGG	VNTTPLVKYAGALFALGICSACVSSAGAPSTAALNVRYVGKTLWLNGRPVTAARVNLNPAPRYATLFPDRRARSKFEYVINFYGTYASIFDYPKSTKQIGTINNVGGQGCTNVLYGYGRQTFWIVAGQNQITQYQVPQTPIKTLDAPAGSMPSSCAMNAAGDLAVGILNGTDEGDVVIYNHASGSGKVYTTPMDEEFFDGYDNQGNLFADGFTGFRSGFALTVLPKGGNKFLLVTTSNAVGFPGSVEWDGTYLTVFDQNANAVYQYSVSGTIATLKGTVSLKGSSDCGQTWIVKGLIYCGDAGNNGGEVFKYPAGGSPIAVFTGNFDTPLGMVAAAK
Ga0307476_10000004492	F084482	GAGG	VDSWLNAEIRKRREDALENARRGRLASLAARGRSTRVRTRIAAGAQAASDALAALARSLRDGETA
Ga0307476_10000004511	F058315	AGGAG	MSVNVSEYMTKFQEEGLAAIKQTQDASLNAIKSFREFTKEMTEKPGSMPALENIPTPTQLVELSFGFASQLLELRKAFTLKIAEMVVDTQKQAEANFKAATPNRPVGK
Ga0307476_10000004688	F005328	GGAGG	VKRLAISIACGVALMAAAITAAIASPPNVTGTWSVQQSGLNGTTTSTITLTQSGNGVVGNNASNGNGFTGTFVNDTQINGKWHGPGGAGWLTVYVSANGHSFNGTWGYNGRAANGSFTANKVLPPSPITAAGTWNVTGAGGPGGFIGKMRCTQSGPSVVCHAGAILMNGKFRTKDKVRATWTGPNGSGWFAFWFNDDNNSFNGTWGNGKDTTPPVGRVVGQRSLGG
Ga0307476_10000004721	F062023	GGAGG	MKSTALFIAVLIALSAQTSAAHSQRHLVYEFGFNTKVASSGNGTGTTTIDIMGPAKDGGVMISGTDYWWNTARPRATNTCEVYPDGGVSCQKPAYAISPIQFTLFPLLGKSYFHPLSTGGGHANWSRTYQVEAAILPGASGVMSQLTTFKSVYTLQGKGKIANAGGTILVEATGKLTQQGGRYLAASSKQRIAYDPAAGIPVVVSDVRTHLPMRSVYSNDLVELKLKSDSR
Ga0307476_10000004736	F003563	GGAG	MIIHGFLKCAGAVVALVILSACGSSTVTPSAAPLTATYVGRTLFVNGRPVAAERLNPLPRYAELVPDRSELTKYEYIINYYGSYASIFNYPKSTAMIGQINGAGGQGCTNVLYGYGKNIIWNPGRTNDLISEYKVPNKLIKTLSLNYTFTSSCAMNASGDLAVGILLGNSYGPGGQVVIFKNATGSGKVYNTPLSKEYFNGYDPSGNLFADGFGSSSNFALVELPKGSSKFVTIKTSNSPQFPGSVQWDGTYLTVFDQYASATYRYTVSGTTATLKNTVQLSGASDCAQTWIVKGLLYCGDAGNGDGEVFRYPAGGSPIATFTGSFDLPLGVTAAKT