NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_114937117

Scaffold Ga0310686_114937117


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_114937117 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21721
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y
F011102Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_11493711710F000323AGGGGGMRKLWTVLLLLSGSFLLAQNSNPGNGTQHNAKDSKGQVTVRGCVSRSSGDYILIKQDPGMTYELHATGKTRLRHYLGQRVEVIGTESPTLSTSSDALNKTGSASSLTLTITSIKTIDKECTAH
Ga0310686_11493711711F000269N/AMCTLALLLLLPAALFSASEPKPTDVPATVIAHLPLPEPTGSQMLLQRENGKHYLYVQQAAKQGFMVVDVSKPDKPSLLKRTAESNQSTSGNLEMVSPDVAIAEAPEKTPTTLSSSSRPTETVRVLDLSDPRNPKTLETFNKVTSILPDGGHGFIYLTNNEGLWILRYNHPALIEPAKKKPLCDSNSEIMAMPPDCD
Ga0310686_1149371173F011102N/AMIVIMPTSLMAQDSARAMLHADGGVWLNGNPAPNSSAIFLHDVIQTQTTTSAKIDTDGSTATVQPETIVQFEEDELVLDHGGLQVNTSRGLRVRVNCMTVIPVNAGTAAPLSQDWTRYDVIDVDGKVQVEAYQNDVKIHYRSVATRGAKPGESSDVVVHQGEKVTREERCGAAARPADVINARGAILNSVWAKGAGLATIGILTCWALCRGDDPVSPSKP
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