Scaffold Ga0310686_113227347

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_113227347
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6040
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F032747	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1132273471	F032747	N/A	DRKQVDWANAERSEHVVQNTLASRTLTRLPGEVFA
Ga0310686_1132273474	F002101	AGGAG	MTTPVVVLPLSTDVNPAKKKRVLLLDTSQTKRDLRADVMRQLGIEVDCAADVLEARCWWRADLYNLVLINVAGETDSRDRFCTDMRGANPPQRIAFFVGGPEYLAIEPQHDEVLPEPDADALHKEMVAALLAQAAGSSSQRWGILEACRKISSVRSISEARSRAIRETPRPSRWA
Ga0310686_1132273477	F003337	N/A	MVILCPLSLGAADTGSAVLHSEGGVWVNGFEVTGSTVVFAGDLLETRPGFVANIDAEGSSVLVQPESVVKFQGTFLSLEHGSVSVGTSTSMSVQVSCIKVEPVSTERTQYDVANVSGAVQVAARKNDVNITVGGVTGVAQKTNPQSGASLSTVVHEGQQATRQESVACGAAPRPGSAGNGLNTKWLEIGGGAGVGIVVLCLLLCRGPGHSNVSPSDP