Scaffold Ga0310686_109486674

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_109486674
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33361
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005887	Metagenome / Metatranscriptome	387	Y
F008092	Metagenome / Metatranscriptome	339	Y
F018412	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_10948667427	F018412	AGGAG	MSSAIDPEAATPSVPQAFEESDRNPPVTEFGGTDAGGGPLPAPPSTESRVTQPGPAPSADAGLQNYDTGDSVDQVQDEAEREG
Ga0310686_10948667429	F005887	AGGA	MKGSSMGVSDRELALRAIDIEFQREVLDKLIRLETKMDGLVGNGQPGRVKVVEDKVATLERNDLRNSIHNRIVNGAISAGVSVAIALHKYWLK
Ga0310686_10948667430	F008092	AGGAG	MTTIPSTTIITNLKGVTLSTAITLKNANTNGIDMAGMLALALSKAAELKLCLTLIVRSTDSADANLTMLNDILASLT