NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_107525761

Scaffold Ga0310686_107525761


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_107525761 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1950
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044611Metagenome154Y
F057539Metagenome / Metatranscriptome136Y
F077551Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1075257611F057539N/AMVGNRARSAVAHGDRVYLWIGNLTGSRKKSRFITSRRRQAEAMQAERKSIVTVSSAQWMERSSWLKDTLIELGKLALSRQVSLTPECLLLMAQDLADVPWPCLELAITGWRQGTLPMGKPEQLDRFPTVRQLRLQARLIEMEGRR
Ga0310686_1075257612F044611AGGAGGMVSETSSAEVYAQIFAGIRDSRDLAQAIARAVRELREAMEKEDSSAVTAAHVRNLREIDPQALAAAYALAEKTCTYWPTPGQIRELAGWSEESRSRVGLQWVFAYLEKHGPEGRPRGGGVRFGEDDTGRRVLLEREAVIPAPPIPTEIEAVLAALGSGSAKQGLRYVSQHPNVKGWEGFSGDSALRSAERIEAQWIRCSLHTMRTSRKGVDTDAASTIPLDGGRNDV
Ga0310686_1075257615F077551AGGGGGMADEPSPSEFLISKMEGMDDVTQVLIVTRTGEGEISYDSCGQIAADTLGMIEFVRVAAAEHLRRALYDV

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