Basic Information | |
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Taxon OID | 3300031708 Open in IMG/M |
Scaffold ID | Ga0310686_107525761 Open in IMG/M |
Source Dataset Name | FICUS49499 Metagenome Czech Republic combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1950 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F044611 | Metagenome | 154 | Y |
F057539 | Metagenome / Metatranscriptome | 136 | Y |
F077551 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0310686_1075257611 | F057539 | N/A | MVGNRARSAVAHGDRVYLWIGNLTGSRKKSRFITSRRRQAEAMQAERKSIVTVSSAQWMERSSWLKDTLIELGKLALSRQVSLTPECLLLMAQDLADVPWPCLELAITGWRQGTLPMGKPEQLDRFPTVRQLRLQARLIEMEGRR |
Ga0310686_1075257612 | F044611 | AGGAGG | MVSETSSAEVYAQIFAGIRDSRDLAQAIARAVRELREAMEKEDSSAVTAAHVRNLREIDPQALAAAYALAEKTCTYWPTPGQIRELAGWSEESRSRVGLQWVFAYLEKHGPEGRPRGGGVRFGEDDTGRRVLLEREAVIPAPPIPTEIEAVLAALGSGSAKQGLRYVSQHPNVKGWEGFSGDSALRSAERIEAQWIRCSLHTMRTSRKGVDTDAASTIPLDGGRNDV |
Ga0310686_1075257615 | F077551 | AGGGGG | MADEPSPSEFLISKMEGMDDVTQVLIVTRTGEGEISYDSCGQIAADTLGMIEFVRVAAAEHLRRALYDV |
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