NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_103632522

Scaffold Ga0310686_103632522


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_103632522 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4679
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F014996Metagenome / Metatranscriptome258Y
F037832Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1036325222F014996GGAVTTVHADIDALKGLREAMVRFRYAQREVTERGGDEIELTRASLAAKASHWQARLEQDRAELEACRASGGEEAAPDCSAYARAVEQTGERLELIRRWQQRVEVEADEFRGTAGAFGDLLDSGLPRAETQLLALITSLEAARRVQASGS
Ga0310686_1036325223F001698AGGAGMSGVINDIEALTEFRAHLMQFNRDLAENFATIRGHWRELGEVWRDDMYRRFGEALDEVTPGITKYLAATEAHEAHLAVLTDRLRGYLETGLGTGAGTSRAESDRGKSA
Ga0310686_1036325224F037832GGAMIPQERTVEPAMAPSPASSPYLSLRQAVRPAIFAHFLLAEDQERARQLAAECEDLLFLTRELLKAAGLADILGARAPSSSGGADAGSAPPEEEDGGDRQAQLLGAYAEAGMLWAKVVGSTMALAQALLGRGDRDGARRLAGFLADAGEDGPAAELNIQLGKAVWDSCRGPLQDISNTMPPAAIGKAIDALRAVLLEVPEDFPDRNREVNRFLPPLAASVLAVMREQEIDIPYSSRVEHIAAGGVARYPDIVKLSLDEIAAEFDGLCHRPANQ
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