NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_102645799

Scaffold Ga0310686_102645799


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_102645799 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1852
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028869Metagenome / Metatranscriptome190Y
F040192Metagenome / Metatranscriptome162Y
F052913Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1026457991F052913N/AVDHYDFGIENFNADQVRAQLSKLNLKFSHKTSKESFKFYDPDGFQVQVNGPDYVGHVS
Ga0310686_1026457992F028869AGGGGGMKTIPGMIAGICLLCSISATGQTQDAAPSRSAALATSGHSALESTTNQYDFDFISKGYVWSNKPLKATASKICQTMKERAFSETPYGINGDQDWNNCLSTQIRNIGYLRWLRNGGFDPNKRNRTNTQAYLKKYYTMGPWGSYSFAELSQAVKATTGKAIIP
Ga0310686_1026457993F040192GGGGGVRSIALLFAVLMVGAASGEAKVACKLPMYIQAPQALGDSTTDTVNLFLYGLKSAVKQHQGCIVDKMTDARLGLYFTTVNLVNAEGHSDASVIAVALAVPLNGVPVYMDHYVLILRETEAVDGPVNSLLESIGETLDRHTLPGQ
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