Basic Information | |
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Taxon OID | 3300031708 Open in IMG/M |
Scaffold ID | Ga0310686_100245519 Open in IMG/M |
Source Dataset Name | FICUS49499 Metagenome Czech Republic combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 47315 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (77.27%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001645 | Metagenome / Metatranscriptome | 658 | Y |
F095810 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0310686_1002455192 | F001645 | AGGAGG | MALLKAPSKRPKTTTLQLRLEQGIKQNLDRYAEFIDANASYVVSEALRVLFKKDEQFKEWLGEHPTDTNHEQIDGGALPKTA |
Ga0310686_10024551923 | F095810 | GAG | MKTLVLFSLVVACLLVLVVFVLPRTPPNEPAQPPAATAAPVWNASAVQSSFAGVQVKEVDATHAALIFSYDLDNNTDVDYRLAKGPATVVMTRLKSSGSVSSEEPVELDSSVFLPARNRTRIAVEVTRNFNWPTGLPGTQIGPVNQEKFRGLVAQEVANLSGFVVFDQATHFQIELPGGWPELSAGNTVPGKF |
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