Scaffold Ga0310686_100062549

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_100062549
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36845
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (59.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024152	Metagenome / Metatranscriptome	207	Y
F039236	Metagenome	164	N
F066222	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1000625492	F039236	AGGAG	MTALPGDASTTAVSPYLSLRQAVRPAIITYTVLAAEQERAGALVAEAEQLLGATRELLEAVGLVHLLSPRPGEEMAGNDRGDRQARLLAAYADAGIQWAKVVGSSIALADELLTQARWDDVLRLADFLDNAGETVVAESLRTRANEAIRGDFYARINSIHDRMTHEETAAAIDTLRSLPREFPERKLEIALRLRPLGTSVKNVTRPDRQARNSIDSAMSSLPDSADYYLAVVSDIFYSLI
Ga0310686_1000625493	F066222	AGGA	VSEVNVSDIESLAAFRSHLLEFNRDLAESFALIRAHWRELEEIWRDDMYRRFGDALEEVTPGIEKYLEATQGHESYLISLVERLRAVRELTAG
Ga0310686_10006254930	F024152	N/A	MSENWGADARVGVPMMQMIAKQVSRCSHRPREIRQIIDQQWLDEESKQQLREMYHVTDTDLAAHEREAAIEARRKTRERYGVPVPTGPCHCDAEPVVHASGRIDCQECGAEWTAPDVRQVIDAQWLDEASKQQLRERFRVTDADLLARERAEAAALADTEHRAAS