NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315291_10154784

Scaffold Ga0315291_10154784


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10154784 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2393
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F016141Metagenome / Metatranscriptome249Y
F024095Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_101547842F014726N/AMGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPAAGATELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQINDNDVDGFTRANIADIDTRATATDYLGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLDNSYVNQIGAVPTATGGNNQVVGVPWVTQTKMRSNVYFVDPNILIEAEQQFTVNISYPSGAVPVLATNVINIGGANANPYKIGIIFDGLLLRPVQ
Ga0315291_101547843F016141AGGAMTPEIIDSLQKRFGSADFSRYQVVRAQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRMYANFVCQSRQGFTTGTTFTYRGYTALNAGTTAGGAMEKLQTVMNSGVLEISFAQKLYYQIARPFVQCPAGFGIDVQSLASARTGAAAETQLCDTNWLVRPDFRATGVYNIDPIQIIEPEIQIQAAVKFPNGNTPNFTNTALDTADGAQTPAVELGLIFDGYVIRPSQ
Ga0315291_101547844F024095GGCGGMDNTNSLPFVYVVTSTLGAAVGATGSSTLIMQADSRFELMGIFGTGGVAATTEDSLFYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFQQFLEKRGIIFEPQSNLLFTFTNLTAAANNITLALHGYKTIL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.