Scaffold Ga0315291_10154246

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10154246
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2398
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010918	Metagenome / Metatranscriptome	297	Y
F017298	Metagenome / Metatranscriptome	241	Y
F072337	Metagenome / Metatranscriptome	121	N
F074877	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_101542461	F074877	N/A	MDKEQMTATILLYSIELRDEYNEMVGAFGHTDPAAQRLQTKYATLLVLIEKLGLDENY
Ga0315291_101542463	F017298	N/A	MYLNMETNENTFIPTTFSLKRKMQWWREQSSIDDKGGSFNLELYLDYLSEQDFNEPKPQE
Ga0315291_101542464	F010918	N/A	MKRYKVTYNYFESGKKMIGTRILEALDKEHAIQLMAMWPRLILKVETV
Ga0315291_101542465	F072337	GAG	MKKYRVWLEDSVEPEGGSWWECYLGKDGKLHDYIYTDEQADTPQWYIDHGYIVEEVE