Scaffold Ga0315291_10040738

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10040738
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5326
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F041766	Metagenome	159	N
F087180	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_100407381	F087180	N/A	KVEARFNFLGTEFIGTPALDQDILALLDVGDLINIQKSITTSAGPSQFGQDLTIEGLEHRLTLSAGHAVTYYTAPTTIVYELILDDITYGTLDTDNVLG
Ga0315291_100407386	F041766	N/A	MVEVPTIGVKNMTETKVFIYEVGRCNLDNGQEILVQIFRHEDTHKIIRAQIAFRTLAGDSWGVPTELDFEK
Ga0315291_100407388	F000722	GGA	VTEESYPETGITQETRKMYPENYSDKYNKVFKEFVDEIMTPPRPIDRFDNHEILLDELTIIYDAHMTIGGEQNRFNASVIRAAINVIRSCSK
Ga0315291_100407389	F011919	N/A	MRTRNVRNTARHQPDQDPLESPRLEDMQESEADPMSDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSASAALNALPKSGSKRRRVYEYLKQSGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR