NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10026265

Scaffold Ga0315291_10026265


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10026265 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6848
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010462Metagenome / Metatranscriptome303Y
F028489Metagenome / Metatranscriptome191Y
F074450Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_1002626511F010462N/AMPAMIYQLPNGKVIHLSIEEFLDLTDQDIQYFMSLDAGEHITNPFTGSAVDNNTKDKYYDFEFLPLDDEALNDIISDDQPFDDIIDLSDNLDI
Ga0315291_100262652F074450N/AMENYTKEDIVQALSNISDKSRKRVYVDQRSYLIGILAYRFMITEYAIAKLTGINRHKINYNKRLALDFCKDKSYIQNVYVYAQMFPFDFTIIDRISPSKRLKRVELDIEKAFFNKLTAVGFILGQNDIRVTIKFLLEKSLKLWEE
Ga0315291_100262657F028489N/AMKMIGRELKIKFAKDYSVFSTLPMNREIDSKHVQKMIASLRMQGCQRTVTCCRIPFIDGTNKLYIIDGQHLATALEREGQPIPYIEIDIESEEELIEKMSYLNNSSKSWDLMNYVNAWKMIRPDYMKLFKWKNMYDIEITMLAIIGVNNSGIKHSTSIIKTGNFTITNLNAEAMCKAFNDIFLKIGMSDRAIKFQFLTAFMQAYGNYNHIKVMANLDKHLKTVKLMATGDETGAYIRKKIFNLIK
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