Scaffold Ga0315291_10004919

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10004919
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16865
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003127	Metagenome / Metatranscriptome	506	Y
F012672	Metagenome / Metatranscriptome	278	N
F038677	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1000491913	F038677	N/A	MAGEFDFLEGFGISTSEVEQPANVYQKFLLDVGNKVTKDLSDFIKQKANNTGGLAASVVYFPTGALSFEIQADDYFKYQDKGVNAVGSNNHGSEFSFRYPGVSQNMAKAIQEWKGFEIGHAYAVAASIKSHGIAPKKIIETVLNEQVLDKIANDLAEVTGLIFSIKFEKATKQ
Ga0315291_1000491917	F012672	N/A	MSYSKEYIKNLELWSVEYIDECCSHKKEQLSNKGEIALVMDRHIPTIDYFLRIWIPIIRKEKAIVPSTWYEWLNGEDKLKSETIKKIDELFKALASDIVANEGKGIFYAKNRLGMHDRQQVETRTVDKFDFE
Ga0315291_100049193	F003127	N/A	MSCEMTSGYNDRTCTNGKGGIKSVLLFPLGNVATSHITANEVDILTVTGETFLYKLKSNLSSYTAPIKVNKDNGTLFYEQSLSMILASDNKELRSEIHLLAQNEVVCLVENADGSIVALGFGEGLQIADANEYTSGVLKGDRKGHVLVLNGMENEEVPDVDPNVYATLLTQQSPSI