Scaffold Ga0315291_10003080

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10003080
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21559
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035747	Metagenome	171	Y
F038652	Metagenome	165	Y
F054011	Metagenome	140	Y
F091963	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1000308024	F091963	N/A	MSNHIPYDLYALSWHSLAYHSLAQFKKIIRNDSTIPSDVLDQIEDNIIPALEYLEGWEPSDAAIQAHIESRGIF
Ga0315291_1000308025	F035747	N/A	MYDTETKVDRNFMRRMISAYQQDLLKLINETPDHPGGDWAQEDLQLIEYLRTKTFSSFNQTITF
Ga0315291_1000308026	F054011	N/A	MYNHIRVFHKDQILHTLKNYMSQEMRRHLMHECPAAYNALCGRIVITSQVEDTGDKVIQRPVDIDPKDFD
Ga0315291_1000308027	F038652	GAG	MAPTIDTIAARELEVYALNFSSVHYNSVGKTLSKFYKQGTFNLDRAIAYIERYLLVPAAKDYKLCYGSMATTWNTYFPKPERLAAAESIAHSFVSEFRLGNFW