Scaffold Ga0315291

Basic Information
Taxon OID	3300031707 Open in IMG/M
Scaffold ID	Ga0315291_10001024 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031707 Open in IMG/M

Scaffold ID

Ga0315291_10001024 Open in IMG/M

Source Dataset Name

Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37672
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (91.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

37672

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (91.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5895	Long. (^o)	-110.359	Alt. (m)	Depth (m)	92
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5895

Long. (^o)

-110.359

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F056282	Metagenome	137	Y
F061612	Metagenome / Metatranscriptome	131	Y
F074512	Metagenome	119	Y
F091541	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1000102432	F056282	GGAG	MIEKPVENVKTDARPHPAGGKGARLSLKEVAERAWKARMSPRLRAWVTQQLAKHNAATGARRQKAQAILTEFRKKVPYIADPVMGEFMETPDQTLCLDEGGLCFIGTDCDGAAITLAAAMMSIGISTMIIGSSHHEPYDVPSHVFMGFEDELGAWVKMDGTTKFPVGRVSPSMREWWVEPGQEAKERGVGDFVGMSGDPTTTGALAAPASALDLLYPGIR
Ga0315291_1000102435	F091541	AGGAG	MANRSITGRKMMKYGDSQEKVRRVPFGLGAAPGTPGAAEKCLRCSFGNIPVIEEVVWTIPLPLTSDEALATLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILSQGIGVHVFCEPMTFSTIGNAFTAPGTPPVQTPPSPDVFTSNDVFAGALGAQFQVGGSGATITPAVFEFGSPAWRAGWNFINAYQFQWKTSQRELVLNELAADVSYFGSFADAEAAGTSEIAIIEFVAAVNATYRSKGSATIFLPISFRRVGSVTPLLNVGVFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPIESPCFLERGIPIGMLFVVQDAVHQAQMLEAVTINNDPFGSNISPDENLPCLTTFGVLDPNVMLEQTLDAVPVLASQQVNVCRQTFKGGILKLAIKIKGWEMPGGWKAYCSANLPQIMASSTAP
Ga0315291_1000102436	F034408	AGGAG	MQPRDTQIRNLALYAPKTAFGMMVGVPRVPFVADIPIQFSSSTVNAPPVVQSLQNNLSQDTVIERISYNLFQQNTFPGSPFQSTYFNQLKQSGQIGVGIQMAVYGGPKYNVNDTFTDLGNLADVFAVTWPEGWPLQKQSNVKISAILTQTPVSVPFNITLTFLGWQFLSKDLDDLSDEEARSRLRKLGIETPDLSILLKP
Ga0315291_1000102442	F061612	GAGG	MKMIHQETMCCGYKKCPTVKVFDDGSVELSDDDAEIGSVGTIKIRPEAAARLIEVLSSARKG
Ga0315291_1000102444	F074512	N/A	MIYVALIGLTLIIVRGTIFRPVRRLWPALLECSQCTGMWVGMTAGASGVVSTGHGRILDTVIVGAATSFLSLLADAVLLNLLGHPEEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315291_10001024

Overview

Ecosystem & Geography

Associated Families

Sequences