Scaffold Ga0308002_1039393

Overview

Basic Information

• Taxon OID: 3300031703
• Scaffold ID: Ga0308002_1039393
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1096
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F050674	Metagenome	145	N
F060351	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308002_10393931	F060351	N/A	MTTKYDDMVWKILGGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTKSDDITALSHDIFNNILKKFTEDKL
Ga0308002_10393932	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYGILKEKLFESTRSLNVEAAYADRCIHWNQNDLSQIKPVNNMRNPWLRFKREFEQCLDGGTPSKNVEIALAWFYAAPYRDDWIAS
Ga0308002_10393933	F050674	N/A	DRIVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFFREYDGAVRRINTYWHMLPRFRHHNPDEFWKRDKVSYPPTYLELMVDDSDW