Scaffold Ga0308002_1011253

Overview

Basic Information

• Taxon OID: 3300031703
• Scaffold ID: Ga0308002_1011253
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2267
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023453	Metagenome / Metatranscriptome	210	Y
F038861	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308002_10112531	F023453	N/A	YELEKWAKSNAPLFEEGTSAEKLSKSLIQRAMDKFKKQPAPTDEKTKEMEDYMAQLEHMLGKEEEVEKSTLKKFFGFFRSHPRMIGLGVMILMLLSPMLPSIAIIGLSLEKILSITLAGLYAIDIASPAVKTALEI
Ga0308002_10112532	F038861	N/A	MNNWIKYETTHKGVGTFVSVWINETDGLVRRVFDGDHCGTGTSKLVNKADILFKNEVFWLTHPVLSESKFLPELISIDIDTRTIVQKYYGPNLLDYLHDPKGFPVPNISEQILEMYTLFTEVGVNKLNGALSNLSFNGDQVIAFDFKWARPAPKANAKEINAFRKWFTKIDPDLVEKLIKMKTS