Scaffold Ga0307995_1110869

Overview

Basic Information

• Taxon OID: 3300031696
• Scaffold ID: Ga0307995_1110869
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1058
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026010	Metagenome / Metatranscriptome	199	Y
F099338	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307995_11108691	F099338	N/A	MDNNVTKGAMKALLTDKPSPITLKLAQQKLKKDSDAVFSLMDNNVTKGAMKNLITDKPTPITLKLA
Ga0307995_11108693	F026010	N/A	KEALVNLVRDTDSPVTQGLVQLDADINKGDGDNLSSLFDANVTRGALKNLVTDKPAPITVKLAQQRKGDADNLSTLFDANVTRGALKNLVTDKPAPITVKLAQKGDADNLSTLFDANVTRGALKNLVTDKPAPITVKLAQQ