NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308008_1116281

Scaffold Ga0308008_1116281


Overview

Basic Information
Taxon OID3300031687 Open in IMG/M
Scaffold IDGa0308008_1116281 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)622
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037432Metagenome168N
F048583Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0308008_11162811F037432N/AMDMKKGLYPDEPGYSDWNIGDLKKELGIEGTLTKQYQYIQPSKFHQKLMKTGHLPLTDDVSYTDILVRNDYEMSNNQRYFQPKIWNTAKLMFNYHALYQLYYMELETNKKLFKLMKWHKTVLLKHIKFLYF
Ga0308008_11162812F048583N/AEGGGAMQVADKDPLHNIDLDLMNALKQAYEEAVKDGFQGSQEKWQDSLSLGALKRLGAKRGGLIKMSMTKN

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