Scaffold Ga0308006_10004789

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308006_10004789

Scaffold Ga0308006_10004789

Overview

Basic Information
Taxon OID	3300031683 Open in IMG/M
Scaffold ID	Ga0308006_10004789 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #69
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4337
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5735	Long. (^o)	77.9231	Alt. (m)		Depth (m)	26
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050664	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308006_100047896	F050664	AGGA	MNNKTYTIIKAATNIMSGLSMATLIILGVTYIGFNNAFVFNNAGIAVTNNPVTDGQINFILEGSRKHECVLTRVHSDAYNDDTGAKFELDFARKIYIR

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