NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318572_10228603

Scaffold Ga0318572_10228603


Overview

Basic Information
Taxon OID3300031681 Open in IMG/M
Scaffold IDGa0318572_10228603 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050117Metagenome / Metatranscriptome145Y
F100177Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0318572_102286031F100177N/AIFVVSTTTYARYSSAQSAAEKSSPCEALRSQKAKAYGFQLAQLNETQMEEKGKEINAFWKQVQADGPTGTACVRSMLEQEKSDHNFQFDAAAMLYQTDHSPATLVLVRDSIAQADFRESDPGSYLALALELGQSGVDIRTLAAKFLRYPDAVVHVPEHALDLDSDTAALFLYGRMDPSFASKALIDQLQAPEPYVRAAAAHLLAEQMTEESFRALSQWTGFSKIEEDFRRNDIQAIMRYKAPNPGDFAHPKWNREQVLSPTLARNSRR
Ga0318572_102286032F050117GGAMEPRAGSQPHTRKEFEEVMAKKGEAFDQQVREKKPSEEELSRIVAESEPIYGIADRTSFIASAIATLKPEDFQAMREARRKSLFNVSDESLSEYLAFTQVMIGLLNRLDLYK
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