Scaffold Ga0302122_10098132

Overview

Basic Information

• Taxon OID: 3300031675
• Scaffold ID: Ga0302122_10098132
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1230
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078667	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302122_100981322	F078667	AGGA	MISKSKLKNLPKPNIINLTECKDRKYYTREQWMRRGVSDIYVHSYDRYEEGVSIPFVGDEQLIAKTTKGVASSQLLTIKWWLENTDEPFGLFFEDDVDYNTVENWNFTLEEYIEKCNEYDWGCLHMCNVFEYPYDYQNEYIPMVPRKRMLWDHGLQAFALKRWYAQKVVDYYFGDDPEKIHYRMPNDSPITTENNIMHGFGLVISFPLFNHNVTDFRSKNIYYYNEQASSAFYSYEFLKDWWAKKGSELSL