Scaffold Ga0307377_10685625

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10685625
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 722
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F018836	Metagenome / Metatranscriptome	233	Y
F102115	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_106856251	F102115	N/A	LSSRAQVTTPDFKDSFTGTSGEIQEQLQNVRDTRQYLYSVGLTNLQGEIDKETQKLKNEGGKEIAKISSQGDLYKQLVGAFSF
Ga0307377_106856252	F001190	N/A	MYGTSTAGQSGTDDYFDINKFEELLNRLEASKGRQQRQKSVEGRRDIFGQGLASMMSNF
Ga0307377_106856253	F018836	N/A	MTSSVPAGQIDADDWFDLDKYRQAAGVAYDFSKQKMETAGAQERETIGKGAEESRTSAEQQDTFRRKDEERDS