Scaffold Ga0307377_10272323

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10272323
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1291
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y
F017667	Metagenome / Metatranscriptome	239	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_102723231	F014016	N/A	IRFDSQAGAWTDGTNWVKGSIIRRFAKERMGKKQLRGRLAKNEISAYWLDKYGVSADVS
Ga0307377_102723232	F014613	GAG	MFPNLSDAQVVGFSVLIPLFGLYLWALWTSAKAKAFNDGYKRGRASVRYTEIVK
Ga0307377_102723234	F059096	N/A	VVVNDAGEKAEVPRPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0307377_102723235	F017667	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSAKKAIETTKPALAEFIKEQRPNDPEPIVWDVSQIA