Scaffold Ga0307377_10000133

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10000133
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102297
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007838	Metagenome / Metatranscriptome	344	Y
F021450	Metagenome	219	N
F028047	Metagenome	193	Y
F043160	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_1000013327	F007838	N/A	MRTLSVFFLFFLYVPVFGQTVVVRSPAWKIEDEAKESLEKADRLRQITTLTEQVNTQKESLQAIRDATEKLRQINRKVANYHNLELAIVQVSEAYTRVLSSLKRISDNNCFKPSEYHMISESMMGLLSQTSYSITTLTVVLTDNFSEMTDGERLLNMNQAIKELRENLGVINAAIIEVEILDNQRMQLRTLNYINSVFK
Ga0307377_1000013330	F021450	N/A	MKKTISLLALFLLFSIEMQAQVTNVLNNFYSVWVKPAIPIIGGLVLIVGALANMGKVLGEARDYKGFITGIVLYVAVYFCLVGIVAFIMAG
Ga0307377_100001337	F043160	N/A	MAKKNFDNLTKNSHLGGGLSNLIPEMNEKHESKKNKVASNDVPKTFLMLPEDYEYLQTYSRYMAFHNNSKYPLKRSLSDAIKLLREAHPEIR
Ga0307377_1000013387	F028047	N/A	MEPDMKGVVFRNDWHLLGLKQIDSLFNELFSDVAIQPGLEIINRLKMLEVCSLEILEDRSSSTVYRIRQTDEVFHVFQPAGDLFRYTTEEYFLKQPIDELVKEYIKKAPVFKIEKISAGRYVIHHLKPPKFSALFIDGTFDKVEWIDRPPEDVSQISKLMRKMGAFYASFFRK