Scaffold Ga0307372_10011663

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307372_10011663

Scaffold Ga0307372_10011663

Overview

Basic Information
Taxon OID	3300031671 Open in IMG/M
Scaffold ID	Ga0307372_10011663 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11676
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097700	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307372_100116637	F097700	AGTAGG	VLARRAIGDWNCQRIFEVILVRRALLLAVALCLGFTCILVACSGDRRESFYPSLADADKDGAITRGWIPDFLPGSSRAIHEVHEISPSTEWCAFEFPPTDSQGLRKALAIVDAARPQVRHIPNPGVSWWPAILNGDLDVEKIHKAGLELYVIERPETSVTTSVLLFAIDWQKGHGFFYLRPE

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