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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031669 Open in IMG/M |
| Scaffold ID | Ga0307375_10079978 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2409 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022872 | Metagenome | 212 | Y |
| F067260 | Metagenome | 126 | N |
| F083794 | Metagenome | 112 | N |
| F100544 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307375_100799781 | F100544 | N/A | IPAVGGFSGGFPFFIPIPRRLTGQDTISLRIVNAAASQNVDVTVWYRNEL |
| Ga0307375_100799782 | F022872 | N/A | MSWQIPQQIEQDIIAGKAQYRTFQTGVGGQSILPVPNNAYAVIFGYDFSPAGGGLKRVSRQNAPALVGDITYLTNDIIRFFETQQISFYTGTDFFPFIHHVNCVTTGIIDRADNATPTTVTIDQMIEEIDNTPISRQVYITSPKDITISVGLIQDSPVATTGAIPITNRTPALLTYGGSPQTPAVQTDFGPAATPIQFMQPSPKDFQDFAFGLLPNGANGQAFATPDATRGLLDPSVHLTSLGVTFRDAAAANYFLCLHYALYTETIPEQRG |
| Ga0307375_100799783 | F083794 | N/A | MTATQATKQLLDMGCVFLSIVDIEGSTIIPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKATQIVIDKGEPAPAIAVNNSAPSRGISDHNSDSVLSYRAALDMQNQIATLTSENNRLRDLVEALEGDLADIEEAQPQQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGSSDYDSL |
| Ga0307375_100799784 | F067260 | AGCAG | MTHFEKIVDPDLKRCETPGQMLEVLMYHYDLNCKLGTITSLAFRQGLKAAVNMISAKAKTNSSALQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |