Scaffold Ga0307375_10054710

Overview

Basic Information

• Taxon OID: 3300031669
• Scaffold ID: Ga0307375_10054710
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3039
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F031261	Metagenome	183	Y
F035272	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_1005471011	F031261	GGAGG	MTRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRKNPDYNRRTIPFCPLDKAVKWDVYIYQGGRXXMLIAINQNI
Ga0307375_1005471012	F010318	AGGAGG	MMNVDSDKPKYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEHEGNQGETDWKWSARESILTEDWSLVEGLNXXLNYI
Ga0307375_100547109	F035272	AGGAGG	MTYKQWCNLRELLTILSDEVDSKVCDDKVSEAFDDVWDMIDEIDTTQEITXKYMR