Scaffold Ga0307375_10001811

Overview

Basic Information

• Taxon OID: 3300031669
• Scaffold ID: Ga0307375_10001811
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22693
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007838	Metagenome / Metatranscriptome	344	Y
F014212	Metagenome	265	Y
F021450	Metagenome	219	N
F043160	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_1000181110	F014212	AGG	MYLNKYYQQMKNKLFIFFFLISASASAQLIHVEGSRALGINGAYVKNGFNISPRITFYKSGNLVYRASLDYEKVSFDISKASIVFVNPELMYTFYTLGDGFFFNVKGGLLTGAEFISNSVLDDRKSQFFVGENIGLCAEYFILNKIMLNLDLDQRFFQLSKVGKASFIVRFGINYNF
Ga0307375_1000181116	F043160	N/A	MAKKNFDNLSKNSHLGGGLSNLIPEMNEKHESKKNKLVSTDVPKTFLMIPEDYEYLHTYSRYMAFHSNSKYPLKRSLSDAIKLLKEAHPEIR
Ga0307375_100018112	F021450	N/A	MKKTISLLTLLLIFSFEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALMNMGKLWGESRDYKSFATSLVLYLAVYFCLVGIVAYIMAS
Ga0307375_100018115	F007838	N/A	MKSLFTFFLLLLTFEVFSQTVVVRSPTWKIEDEAKDAVDKADRLRQLEKLTEQVKTQKESLQAIRDATEKLRKINRKVANYHNLELAIVQVSESYTRVLNSLKTISDHNCFKPSEYHRISESMMGLLSQTSYSITTLTVVLTDNFSEMSDGERLLNMNQALKELRENLGVINAAIIEVEILDNQRMQIRTLNYISSVFN