Scaffold Ga0307484_105421

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307484_105421

Scaffold Ga0307484_105421

Overview

Basic Information
Taxon OID	3300031663 Open in IMG/M
Scaffold ID	Ga0307484_105421 Open in IMG/M
Source Dataset Name	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	779
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031875	Metagenome / Metatranscriptome	181	N
F037987	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307484_1054211	F031875	GAG	VLMRSSNLSPFGDCDSSVLETCPDYLTQLAAVSNRDSLPDPSFAFDDVRTPPEESVNSASPNFRPVQRSRGNQPAPAFPRSPGIILKRSILILLSTAVS
Ga0307484_1054213	F037987	N/A	LFPKPTLDARLSAAAGFPTPFSTASGVIGLVAGPSGDFHHADFE

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