NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307986_10279626

Scaffold Ga0307986_10279626


Overview

Basic Information
Taxon OID3300031659 Open in IMG/M
Scaffold IDGa0307986_10279626 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #82
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)708
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium BACL1 MAG-120619-bin26(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072762Metagenome121Y
F090890Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0307986_102796261F072762AGGAGVIDLIGFYIVIVIMVCMAWIWRKLKDIETHLKERDLLQDKHNEHVSSELSAISHDAMNQEWGRNNKD
Ga0307986_102796262F090890AGGAMSSWLDKYKFFVILLVFACFIYLLLGNQTANEGGKILDDETFAEIQECITRNKIAFSKEIFEEGAEEQMIKDDIDRVTEKVIALCTEHGIETE

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