Scaffold Ga0307984_1016814

Overview

Basic Information

• Taxon OID: 3300031658
• Scaffold ID: Ga0307984_1016814
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2541
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066838	Metagenome / Metatranscriptome	126	Y
F076162	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307984_10168141	F066838	GGGGG	VAQEFFINSQTLEDQIRKLLPSQGGQGAGFDLSASTQIVPIIDLTESAEGSNIRQDIQTAISHGSATTFNVDNTTTT
Ga0307984_10168146	F076162	N/A	GNYVNNDLITTGAQRNRILVRFTNDTSATRTIRCGIFIGG